Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXN1O15353 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXN1O15353 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 ACTG1P17-201ENST00000558391 1119 ntBASIC19.17■□□□□ 0.66
FOXN1O15353 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXN1O15353 AC009542.2-202ENST00000619004 1067 ntBASIC19.17■□□□□ 0.66
FOXN1O15353 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
FOXN1O15353 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXN1O15353 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXN1O15353 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
FOXN1O15353 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
FOXN1O15353 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN1O15353 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 RPL7P3-201ENST00000441388 714 ntBASIC19.16■□□□□ 0.66
FOXN1O15353 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 AP001258.2-201ENST00000529891 490 ntBASIC19.16■□□□□ 0.66
FOXN1O15353 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
FOXN1O15353 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
FOXN1O15353 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 AC092978.1-202ENST00000637590 1327 ntBASIC19.16■□□□□ 0.66
FOXN1O15353 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 AC092364.2-201ENST00000596710 2692 ntBASIC19.16■□□□□ 0.66
FOXN1O15353 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 HLA-A-202ENST00000376806 1854 ntBASIC19.16■□□□□ 0.66
FOXN1O15353 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN1O15353 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN1O15353 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
FOXN1O15353 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
FOXN1O15353 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
FOXN1O15353 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXN1O15353 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXN1O15353 EIF4HP1-201ENST00000453115 687 ntBASIC19.15■□□□□ 0.66
FOXN1O15353 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.15■□□□□ 0.66
FOXN1O15353 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.15■□□□□ 0.66
FOXN1O15353 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXN1O15353 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
FOXN1O15353 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXN1O15353 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
FOXN1O15353 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN1O15353 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.14■□□□□ 0.66
FOXN1O15353 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.14■□□□□ 0.66
FOXN1O15353 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.14■□□□□ 0.66
FOXN1O15353 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
FOXN1O15353 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
FOXN1O15353 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXN1O15353 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms