Protein–RNA interactions for Protein: Q9HBX3

SND1-IT1, Uncharacterized protein encoded by SND1-IT1, humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-IT1Q9HBX3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 NSUN5P1-202ENST00000421140 1535 ntBASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 NSUN5P2-203ENST00000457352 1529 ntBASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SND1-IT1Q9HBX3 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AL109954.1-202ENST00000564051 2148 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AL353135.1-201ENST00000606729 504 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AC114341.1-201ENST00000618070 349 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AC073592.4-201ENST00000623827 446 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 CTBP1-AS2-206ENST00000581398 5652 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 AC079776.2-201ENST00000641154 1609 ntBASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 PC-214ENST00000628663 1470 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC10.87□□□□□ -0.67
SND1-IT1Q9HBX3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC10.86□□□□□ -0.67
SND1-IT1Q9HBX3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC10.86□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms