Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 AL590627.1-203ENST00000421194 1026 ntBASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 RHOQP3-201ENST00000437982 621 ntBASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 AC021097.1-201ENST00000607902 574 ntBASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 Z83851.2-201ENST00000609564 659 ntBASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 AC006538.3-201ENST00000612495 578 ntBASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM56Q9BRZ2 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 AC104109.2-201ENST00000602919 1418 ntBASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 AC092850.2-201ENST00000623821 2697 ntBASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM56Q9BRZ2 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AC073347.1-201ENST00000421633 2643 ntBASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AC007967.2-201ENST00000432613 625 ntBASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AC096734.2-201ENST00000562054 433 ntBASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AC034105.1-201ENST00000563488 319 ntBASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM56Q9BRZ2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM56Q9BRZ2 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms