Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AL662844.4-201ENST00000606367 2838 ntBASIC15.64■□□□□ 0.09
VPS13AQ96RL7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AC005332.8-201ENST00000622750 2735 ntBASIC15.64■□□□□ 0.09
VPS13AQ96RL7 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AL391256.1-201ENST00000443260 1855 ntBASIC15.64■□□□□ 0.09
VPS13AQ96RL7 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AC026410.3-201ENST00000514280 936 ntBASIC15.64■□□□□ 0.09
VPS13AQ96RL7 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
VPS13AQ96RL7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 FO393414.2-201ENST00000405153 598 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC022217.1-201ENST00000521069 738 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC023310.1-201ENST00000554836 735 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 WT1-AS_6.1-201ENST00000614919 121 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC148477.9-201ENST00000623974 539 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC011491.1-203ENST00000637688 543 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC008132.1-202ENST00000342005 1389 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AL023775.1-201ENST00000454907 1746 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 SERF2-206ENST00000409291 807 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 HSPB1P2-201ENST00000448722 546 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 HOMER2P2-201ENST00000451621 847 ntBASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS13AQ96RL7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms