Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC138466.5-201ENST00000624002 808 ntBASIC15.99■□□□□ 0.15
TTC28Q96AY4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 AL132780.4-201ENST00000624870 1135 ntBASIC15.98■□□□□ 0.15
TTC28Q96AY4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.98■□□□□ 0.15
TTC28Q96AY4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TTC28Q96AY4 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 POM121L8P-201ENST00000417732 1281 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 POM121L9P-203ENST00000441984 1285 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MRPL37P1-201ENST00000592451 1337 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 TBC1D3J-201ENST00000620719 1426 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MIR5196-201ENST00000578146 115 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 AC073413.1-201ENST00000603927 732 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 AP005019.2-201ENST00000615104 511 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 AL512652.2-201ENST00000625156 1716 ntBASIC15.97■□□□□ 0.15
TTC28Q96AY4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC15.97■□□□□ 0.15
TTC28Q96AY4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
TTC28Q96AY4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 ISCA2P1-201ENST00000425548 448 ntBASIC15.96■□□□□ 0.15
TTC28Q96AY4 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 AC010503.4-201ENST00000615487 688 ntBASIC15.96■□□□□ 0.15
TTC28Q96AY4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 AL031731.1-201ENST00000642131 2094 ntBASIC15.96■□□□□ 0.15
TTC28Q96AY4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TTC28Q96AY4 RN7SL846P-201ENST00000467429 292 ntBASIC15.96■□□□□ 0.15
TTC28Q96AY4 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 TMCO5B-205ENST00000530020 894 ntBASIC15.96■□□□□ 0.15
TTC28Q96AY4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.96■□□□□ 0.15
TTC28Q96AY4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms