Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC008677.1-201ENST00000519230 1561 ntBASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC079776.4-201ENST00000511039 504 ntBASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC109635.5-201ENST00000533593 962 ntBASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC092850.2-201ENST00000623821 2697 ntBASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLHC1Q8NHS4 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 KRT18P2-201ENST00000447938 1258 ntBASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC034105.1-201ENST00000563488 319 ntBASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC073439.1-201ENST00000624121 1774 ntBASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC126177.1-201ENST00000547829 2218 ntBASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC104640.1-201ENST00000562617 2109 ntBASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.53■□□□□ 0.08
CLHC1Q8NHS4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms