Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 MIR4722-201ENST00000578292 60 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC132938.4-201ENST00000623835 848 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC138627.1-207ENST00000641560 1006 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 PCDHB18P-201ENST00000524813 2368 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 NF2-208ENST00000403435 2568 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 KRT18P25-201ENST00000508931 1278 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 CHMP4BP1-201ENST00000556017 588 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 AC145423.3-201ENST00000615987 467 ntBASIC21.55■■□□□ 1.04
NPHP3Q7Z494 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP3Q7Z494 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.54■■□□□ 1.04
NPHP3Q7Z494 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AC009053.2-201ENST00000563701 2365 ntBASIC21.54■■□□□ 1.04
NPHP3Q7Z494 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AC060834.1-201ENST00000443027 2032 ntBASIC21.54■■□□□ 1.04
NPHP3Q7Z494 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 MIR1202-201ENST00000408529 83 ntBASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC21.54■■□□□ 1.04
NPHP3Q7Z494 AC006453.4-201ENST00000636949 1252 ntBASIC21.54■■□□□ 1.04
NPHP3Q7Z494 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 AC018735.1-201ENST00000437208 1502 ntBASIC21.53■■□□□ 1.04
NPHP3Q7Z494 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms