Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NUP54Q7Z3B4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AL645939.2-201ENST00000427340 991 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AL353705.2-201ENST00000428243 662 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CNN2P2-201ENST00000443536 909 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CNN2P3-201ENST00000450201 906 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AC015911.4-201ENST00000588022 1070 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AC003101.2-201ENST00000612557 442 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AL136317.3-201ENST00000618497 906 ntBASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
NUP54Q7Z3B4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PMS2P2-201ENST00000425039 1128 ntBASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AC245100.5-201ENST00000452108 331 ntBASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AC067863.1-201ENST00000494933 530 ntBASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 MIR6080-201ENST00000617359 66 ntBASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.93□□□□□ -0.02
NUP54Q7Z3B4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms