Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13CQ709C8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 Z93015.1-201ENST00000451718 390 ntBASIC13.19□□□□□ -0.3
VPS13CQ709C8 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.19□□□□□ -0.3
VPS13CQ709C8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
VPS13CQ709C8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AL022328.3-201ENST00000607943 679 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AZGP1P1-201ENST00000411909 902 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AC104784.1-201ENST00000473096 294 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 IMP3P2-201ENST00000489760 475 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
VPS13CQ709C8 KRT18P64-201ENST00000434946 1219 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AC012441.1-201ENST00000446669 685 ntBASIC13.18□□□□□ -0.3
VPS13CQ709C8 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC13.18□□□□□ -0.3
VPS13CQ709C8 AL359258.3-201ENST00000622910 2331 ntBASIC13.17□□□□□ -0.3
VPS13CQ709C8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 FAM197Y7-201ENST00000432892 766 ntBASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 HLA-A-202ENST00000376806 1854 ntBASIC13.17□□□□□ -0.3
VPS13CQ709C8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 ECM1P1-201ENST00000604092 1279 ntBASIC13.17□□□□□ -0.3
VPS13CQ709C8 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms