Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 TPM4P1-201ENST00000436100 807 ntBASIC18.39■□□□□ 0.53
ATL3Q6DD88 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 AL138918.1-201ENST00000568306 659 ntBASIC18.39■□□□□ 0.53
ATL3Q6DD88 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 AC008267.7-201ENST00000624570 1194 ntBASIC18.39■□□□□ 0.53
ATL3Q6DD88 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ATL3Q6DD88 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATL3Q6DD88 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ATL3Q6DD88 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATL3Q6DD88 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATL3Q6DD88 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.39■□□□□ 0.53
ATL3Q6DD88 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.39■□□□□ 0.53
ATL3Q6DD88 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 BNIP3P1-202ENST00000550043 1585 ntBASIC18.38■□□□□ 0.53
ATL3Q6DD88 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC099063.4-201ENST00000641099 1602 ntBASIC18.38■□□□□ 0.53
ATL3Q6DD88 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC009078.2-202ENST00000463353 338 ntBASIC18.38■□□□□ 0.53
ATL3Q6DD88 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATL3Q6DD88 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
ATL3Q6DD88 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 RPL13AP23-201ENST00000480739 586 ntBASIC18.37■□□□□ 0.53
ATL3Q6DD88 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATL3Q6DD88 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms