Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 AC026748.1-201ENST00000624349 3251 ntBASIC11.47□□□□□ -0.57
RPL39P62891 AC139749.1-202ENST00000617529 3139 ntBASIC11.47□□□□□ -0.57
RPL39P62891 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
RPL39P62891 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC11.47□□□□□ -0.57
RPL39P62891 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RPL39P62891 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 PI4KAP1-204ENST00000612579 1703 ntBASIC11.46□□□□□ -0.57
RPL39P62891 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 AC091951.1-201ENST00000512854 2465 ntBASIC11.46□□□□□ -0.57
RPL39P62891 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 AL353732.1-201ENST00000569618 1459 ntBASIC11.46□□□□□ -0.57
RPL39P62891 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 MED16-201ENST00000269814 1199 ntTSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 POM121L3P-201ENST00000419331 1163 ntBASIC11.46□□□□□ -0.57
RPL39P62891 TSSC2-201ENST00000450217 709 ntBASIC11.46□□□□□ -0.57
RPL39P62891 PRYP5-201ENST00000451909 266 ntBASIC11.46□□□□□ -0.57
RPL39P62891 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 AP002414.4-201ENST00000589764 1148 ntBASIC11.46□□□□□ -0.57
RPL39P62891 RPS15-207ENST00000591032 550 ntTSL 3 BASIC11.46□□□□□ -0.57
RPL39P62891 RPS15-212ENST00000593052 629 ntTSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.46□□□□□ -0.57
RPL39P62891 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RPL39P62891 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
RPL39P62891 AP001350.2-201ENST00000625104 1094 ntBASIC11.46□□□□□ -0.57
RPL39P62891 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
RPL39P62891 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
RPL39P62891 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RPL39P62891 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC11.46□□□□□ -0.58
RPL39P62891 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 AC008677.1-201ENST00000519230 1561 ntBASIC11.45□□□□□ -0.58
RPL39P62891 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.45□□□□□ -0.58
RPL39P62891 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RPL39P62891 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms