Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MIR648-201ENST00000385046 94 ntBASIC14.86□□□□□ -0.03
CDH11P55287 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.86□□□□□ -0.03
CDH11P55287 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.86□□□□□ -0.03
CDH11P55287 KRT18P2-201ENST00000447938 1258 ntBASIC14.86□□□□□ -0.03
CDH11P55287 HCG4B-203ENST00000450128 991 ntBASIC14.86□□□□□ -0.03
CDH11P55287 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.86□□□□□ -0.03
CDH11P55287 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.86□□□□□ -0.03
CDH11P55287 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.86□□□□□ -0.03
CDH11P55287 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.86□□□□□ -0.03
CDH11P55287 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.86□□□□□ -0.03
CDH11P55287 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CDH11P55287 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.86□□□□□ -0.03
CDH11P55287 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.86□□□□□ -0.03
CDH11P55287 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CDH11P55287 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CDH11P55287 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CDH11P55287 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH11P55287 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH11P55287 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.85□□□□□ -0.03
CDH11P55287 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.85□□□□□ -0.03
CDH11P55287 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 AC092850.2-201ENST00000623821 2697 ntBASIC14.85□□□□□ -0.03
CDH11P55287 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.85□□□□□ -0.03
CDH11P55287 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CDH11P55287 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.84□□□□□ -0.03
CDH11P55287 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH11P55287 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH11P55287 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.84□□□□□ -0.03
CDH11P55287 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CDH11P55287 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH11P55287 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.84□□□□□ -0.03
CDH11P55287 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDH11P55287 AC004967.1-201ENST00000453589 447 ntBASIC14.84□□□□□ -0.03
CDH11P55287 AC112482.1-201ENST00000492080 688 ntBASIC14.84□□□□□ -0.03
CDH11P55287 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH11P55287 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CDH11P55287 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.84□□□□□ -0.03
CDH11P55287 AC055717.3-201ENST00000622967 595 ntBASIC14.84□□□□□ -0.03
CDH11P55287 AP001350.2-201ENST00000625104 1094 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms