Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.69■□□□□ 0.26
COPAP53621 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.69■□□□□ 0.26
COPAP53621 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.69■□□□□ 0.26
COPAP53621 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.69■□□□□ 0.26
COPAP53621 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COPAP53621 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.69■□□□□ 0.26
COPAP53621 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COPAP53621 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.68■□□□□ 0.26
COPAP53621 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.68■□□□□ 0.26
COPAP53621 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.68■□□□□ 0.26
COPAP53621 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.68■□□□□ 0.26
COPAP53621 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.68■□□□□ 0.26
COPAP53621 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 AC073439.1-201ENST00000624121 1774 ntBASIC16.68■□□□□ 0.26
COPAP53621 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 AC024909.3-201ENST00000611513 2257 ntBASIC16.68■□□□□ 0.26
COPAP53621 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 AL365203.3-201ENST00000609742 2057 ntBASIC16.68■□□□□ 0.26
COPAP53621 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COPAP53621 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.68■□□□□ 0.26
COPAP53621 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.67■□□□□ 0.26
COPAP53621 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.67■□□□□ 0.26
COPAP53621 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COPAP53621 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COPAP53621 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.67■□□□□ 0.26
COPAP53621 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.67■□□□□ 0.26
COPAP53621 HLA-A-202ENST00000376806 1854 ntBASIC16.67■□□□□ 0.26
COPAP53621 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COPAP53621 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.67■□□□□ 0.26
COPAP53621 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COPAP53621 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms