Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.64■□□□□ 0.41
CLCN3P51790 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CLCN3P51790 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.64■□□□□ 0.41
CLCN3P51790 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.64■□□□□ 0.41
CLCN3P51790 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLCN3P51790 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.63■□□□□ 0.41
CLCN3P51790 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
CLCN3P51790 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.63■□□□□ 0.41
CLCN3P51790 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.63■□□□□ 0.41
CLCN3P51790 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.63■□□□□ 0.41
CLCN3P51790 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 TIMM17BP1-201ENST00000545713 516 ntBASIC17.63■□□□□ 0.41
CLCN3P51790 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.63■□□□□ 0.41
CLCN3P51790 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CLCN3P51790 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.63■□□□□ 0.41
CLCN3P51790 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CLCN3P51790 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
CLCN3P51790 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CLCN3P51790 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CLCN3P51790 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.63■□□□□ 0.41
CLCN3P51790 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLCN3P51790 AP001282.1-201ENST00000531301 1499 ntBASIC17.63■□□□□ 0.41
CLCN3P51790 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CLCN3P51790 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.62■□□□□ 0.41
CLCN3P51790 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CLCN3P51790 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.62■□□□□ 0.41
CLCN3P51790 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.62■□□□□ 0.41
CLCN3P51790 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
CLCN3P51790 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 AC074338.1-201ENST00000416825 156 ntBASIC17.62■□□□□ 0.41
CLCN3P51790 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.62■□□□□ 0.41
CLCN3P51790 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.62■□□□□ 0.41
CLCN3P51790 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.62■□□□□ 0.41
CLCN3P51790 CR383656.12-201ENST00000549567 513 ntBASIC17.62■□□□□ 0.41
CLCN3P51790 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.62■□□□□ 0.41
CLCN3P51790 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.62■□□□□ 0.41
CLCN3P51790 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.62■□□□□ 0.41
CLCN3P51790 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.62■□□□□ 0.41
CLCN3P51790 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLCN3P51790 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.61■□□□□ 0.41
CLCN3P51790 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CLCN3P51790 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CLCN3P51790 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CLCN3P51790 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CLCN3P51790 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.61■□□□□ 0.41
CLCN3P51790 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLCN3P51790 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.61■□□□□ 0.41
CLCN3P51790 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms