Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.71■□□□□ 0.11
HNF4AP41235 AC073389.1-201ENST00000595595 795 ntBASIC15.71■□□□□ 0.11
HNF4AP41235 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HNF4AP41235 SPDYE10P-202ENST00000612005 668 ntBASIC15.71■□□□□ 0.11
HNF4AP41235 SPDYE8P-202ENST00000612377 668 ntBASIC15.71■□□□□ 0.11
HNF4AP41235 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
HNF4AP41235 AC092850.2-201ENST00000623821 2697 ntBASIC15.71■□□□□ 0.11
HNF4AP41235 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
HNF4AP41235 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.71■□□□□ 0.11
HNF4AP41235 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.71■□□□□ 0.11
HNF4AP41235 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HNF4AP41235 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.71■□□□□ 0.1
HNF4AP41235 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HNF4AP41235 AC007950.2-201ENST00000615045 2347 ntBASIC15.71■□□□□ 0.1
HNF4AP41235 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.7■□□□□ 0.1
HNF4AP41235 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.7■□□□□ 0.1
HNF4AP41235 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 KRT8P48-201ENST00000515599 1220 ntBASIC15.7■□□□□ 0.1
HNF4AP41235 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.7■□□□□ 0.1
HNF4AP41235 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HNF4AP41235 AC026120.1-201ENST00000611536 926 ntBASIC15.7■□□□□ 0.1
HNF4AP41235 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HNF4AP41235 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HNF4AP41235 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HNF4AP41235 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.7■□□□□ 0.1
HNF4AP41235 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
HNF4AP41235 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 AC112504.1-201ENST00000623415 1841 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 HAUS4P1-201ENST00000406739 1145 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
HNF4AP41235 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.69■□□□□ 0.1
HNF4AP41235 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.69■□□□□ 0.1
HNF4AP41235 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.69■□□□□ 0.1
HNF4AP41235 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 MIR4321-201ENST00000592276 80 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HNF4AP41235 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HNF4AP41235 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.69■□□□□ 0.1
HNF4AP41235 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms