Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 KRT8P12-202ENST00000472924 1397 ntBASIC15.34■□□□□ 0.05
RORAP35398 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RORAP35398 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RORAP35398 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RORAP35398 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.33■□□□□ 0.05
RORAP35398 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RORAP35398 U82695.1-201ENST00000635752 1889 ntBASIC15.33■□□□□ 0.05
RORAP35398 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.33■□□□□ 0.05
RORAP35398 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.33■□□□□ 0.04
RORAP35398 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.33■□□□□ 0.04
RORAP35398 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 AL512361.1-201ENST00000554200 418 ntBASIC15.33■□□□□ 0.04
RORAP35398 AC010336.2-201ENST00000564226 506 ntBASIC15.33■□□□□ 0.04
RORAP35398 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.33■□□□□ 0.04
RORAP35398 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 SPDYE22P-201ENST00000582158 798 ntBASIC15.33■□□□□ 0.04
RORAP35398 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 AC004840.1-201ENST00000636359 365 ntBASIC15.33■□□□□ 0.04
RORAP35398 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
RORAP35398 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.33■□□□□ 0.04
RORAP35398 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 BTBD7P1-201ENST00000447253 1453 ntBASIC15.33■□□□□ 0.04
RORAP35398 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.33■□□□□ 0.04
RORAP35398 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RORAP35398 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.33■□□□□ 0.04
RORAP35398 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 RN7SL618P-201ENST00000477850 296 ntBASIC15.32■□□□□ 0.04
RORAP35398 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.32■□□□□ 0.04
RORAP35398 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 AC005225.4-201ENST00000557330 545 ntBASIC15.32■□□□□ 0.04
RORAP35398 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.32■□□□□ 0.04
RORAP35398 AC004233.3-201ENST00000607794 1269 ntBASIC15.32■□□□□ 0.04
RORAP35398 AC012645.4-201ENST00000610691 1061 ntBASIC15.32■□□□□ 0.04
RORAP35398 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.32■□□□□ 0.04
RORAP35398 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RORAP35398 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RORAP35398 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RORAP35398 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RORAP35398 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms