Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 AC002056.1-201ENST00000395613 760 ntBASIC15.79■□□□□ 0.12
PCNAP12004 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PCNAP12004 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.79■□□□□ 0.12
PCNAP12004 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 AL161645.1-201ENST00000622716 1255 ntBASIC15.79■□□□□ 0.12
PCNAP12004 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
PCNAP12004 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PCNAP12004 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PCNAP12004 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
PCNAP12004 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PCNAP12004 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 U82695.1-201ENST00000635752 1889 ntBASIC15.78■□□□□ 0.12
PCNAP12004 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.78■□□□□ 0.12
PCNAP12004 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.78■□□□□ 0.12
PCNAP12004 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.78■□□□□ 0.12
PCNAP12004 AC112191.1-201ENST00000523689 701 ntBASIC15.78■□□□□ 0.12
PCNAP12004 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 AP002472.1-201ENST00000577490 586 ntBASIC15.78■□□□□ 0.12
PCNAP12004 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PCNAP12004 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
PCNAP12004 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PCNAP12004 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.77■□□□□ 0.12
PCNAP12004 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PCNAP12004 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.77■□□□□ 0.12
PCNAP12004 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 POLD2P1-201ENST00000511220 997 ntBASIC15.77■□□□□ 0.12
PCNAP12004 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.77■□□□□ 0.12
PCNAP12004 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
PCNAP12004 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PCNAP12004 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PCNAP12004 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms