Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.86■□□□□ 0.45
TPM1P09493 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TPM1P09493 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.85■□□□□ 0.45
TPM1P09493 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.85■□□□□ 0.45
TPM1P09493 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 FGFR3P6-201ENST00000457012 610 ntBASIC17.85■□□□□ 0.45
TPM1P09493 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 RPS15P9-201ENST00000494093 319 ntBASIC17.85■□□□□ 0.45
TPM1P09493 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.85■□□□□ 0.45
TPM1P09493 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.85■□□□□ 0.45
TPM1P09493 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 AC091076.1-201ENST00000610741 619 ntBASIC17.85■□□□□ 0.45
TPM1P09493 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.85■□□□□ 0.45
TPM1P09493 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TPM1P09493 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.85■□□□□ 0.45
TPM1P09493 TCAF2P1-201ENST00000291129 2421 ntBASIC17.84■□□□□ 0.45
TPM1P09493 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TPM1P09493 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.84■□□□□ 0.45
TPM1P09493 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.84■□□□□ 0.45
TPM1P09493 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.84■□□□□ 0.45
TPM1P09493 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.84■□□□□ 0.45
TPM1P09493 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.84■□□□□ 0.45
TPM1P09493 AL121772.3-201ENST00000610840 674 ntBASIC17.84■□□□□ 0.45
TPM1P09493 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 AL358472.4-201ENST00000633140 710 ntBASIC17.84■□□□□ 0.45
TPM1P09493 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TPM1P09493 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.84■□□□□ 0.45
TPM1P09493 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TPM1P09493 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.83■□□□□ 0.45
TPM1P09493 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.83■□□□□ 0.45
TPM1P09493 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TPM1P09493 PPT1-215ENST00000641471 2368 ntBASIC17.83■□□□□ 0.45
TPM1P09493 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.83■□□□□ 0.45
TPM1P09493 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TPM1P09493 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TPM1P09493 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TPM1P09493 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
TPM1P09493 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.83■□□□□ 0.45
TPM1P09493 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.83■□□□□ 0.45
TPM1P09493 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.83■□□□□ 0.45
TPM1P09493 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
TPM1P09493 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TPM1P09493 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TPM1P09493 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TPM1P09493 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.83■□□□□ 0.44
TPM1P09493 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.83■□□□□ 0.44
TPM1P09493 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.83■□□□□ 0.44
TPM1P09493 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms