Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
SHOX2O60902 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 TCAF1P1-201ENST00000414990 2232 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 Z83836.1-201ENST00000624605 1642 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 TERF1P1-201ENST00000311003 1181 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 FAM8A3P-201ENST00000427218 844 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 RN7SL606P-201ENST00000472779 293 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.17■□□□□ 0.18
SHOX2O60902 RNF126P1-202ENST00000569893 925 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 REXO1L3P-201ENST00000622202 1288 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SHOX2O60902 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHOX2O60902 AL122018.1-201ENST00000446607 2310 ntBASIC16.17■□□□□ 0.18
SHOX2O60902 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.17■□□□□ 0.18
SHOX2O60902 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
SHOX2O60902 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHOX2O60902 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.16■□□□□ 0.18
SHOX2O60902 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SHOX2O60902 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
SHOX2O60902 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SHOX2O60902 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 AC113347.1-201ENST00000413321 391 ntBASIC16.16■□□□□ 0.18
SHOX2O60902 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 KRT18P57-201ENST00000443599 1254 ntBASIC16.16■□□□□ 0.18
SHOX2O60902 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.16■□□□□ 0.18
SHOX2O60902 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.16■□□□□ 0.18
SHOX2O60902 AC011467.2-201ENST00000598425 242 ntBASIC16.16■□□□□ 0.18
SHOX2O60902 AC005363.2-201ENST00000618631 242 ntBASIC16.16■□□□□ 0.18
SHOX2O60902 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SHOX2O60902 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SHOX2O60902 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHOX2O60902 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC16.16■□□□□ 0.18
SHOX2O60902 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 AC027612.1-201ENST00000445234 2395 ntBASIC16.15■□□□□ 0.18
SHOX2O60902 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.15■□□□□ 0.18
SHOX2O60902 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SHOX2O60902 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHOX2O60902 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SHOX2O60902 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms