Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP2AO43633 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.14■□□□□ 0.49
CHMP2AO43633 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.14■□□□□ 0.49
CHMP2AO43633 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP2AO43633 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.14■□□□□ 0.49
CHMP2AO43633 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 AL590560.3-201ENST00000623350 461 ntBASIC18.14■□□□□ 0.49
CHMP2AO43633 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CHMP2AO43633 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CHMP2AO43633 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.14■□□□□ 0.49
CHMP2AO43633 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 FER1L4-210ENST00000615531 5998 ntBASIC18.13■□□□□ 0.49
CHMP2AO43633 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP2AO43633 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CHMP2AO43633 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP2AO43633 UGT1A2P-201ENST00000454886 866 ntBASIC18.13■□□□□ 0.49
CHMP2AO43633 RNA5SP421-201ENST00000516864 134 ntBASIC18.13■□□□□ 0.49
CHMP2AO43633 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP2AO43633 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP2AO43633 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP2AO43633 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.13■□□□□ 0.49
CHMP2AO43633 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.13■□□□□ 0.49
CHMP2AO43633 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CHMP2AO43633 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.13■□□□□ 0.49
CHMP2AO43633 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CHMP2AO43633 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP2AO43633 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.13■□□□□ 0.49
CHMP2AO43633 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHMP2AO43633 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.12■□□□□ 0.49
CHMP2AO43633 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CHMP2AO43633 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.12■□□□□ 0.49
CHMP2AO43633 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.12■□□□□ 0.49
CHMP2AO43633 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.12■□□□□ 0.49
CHMP2AO43633 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.12■□□□□ 0.49
CHMP2AO43633 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.12■□□□□ 0.49
CHMP2AO43633 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CHMP2AO43633 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CHMP2AO43633 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CHMP2AO43633 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.11■□□□□ 0.49
CHMP2AO43633 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP2AO43633 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.11■□□□□ 0.49
CHMP2AO43633 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP2AO43633 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.11■□□□□ 0.49
CHMP2AO43633 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP2AO43633 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms