Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC016027.1-202ENST00000607927 1699 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AC013268.4-201ENST00000637413 2228 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AL590627.1-203ENST00000421194 1026 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AC023141.13-201ENST00000604991 943 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AC021097.1-201ENST00000607902 574 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AC064836.3-201ENST00000607928 673 ntBASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RHBDD3Q9Y3P4 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.21□□□□□ -0.14
RHBDD3Q9Y3P4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 PMS2P4-201ENST00000412466 1052 ntBASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC007967.2-201ENST00000432613 625 ntBASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC018845.2-201ENST00000568326 409 ntBASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 AC007064.4-201ENST00000637740 555 ntBASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RHBDD3Q9Y3P4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RHBDD3Q9Y3P4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms