Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
CDH9Q9ULB4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
CDH9Q9ULB4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17■□□□□ 0.31
CDH9Q9ULB4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
CDH9Q9ULB4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17■□□□□ 0.31
CDH9Q9ULB4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AZGP1P1-201ENST00000411909 902 ntBASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC025048.3-201ENST00000590609 569 ntBASIC16.99■□□□□ 0.31
CDH9Q9ULB4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AC005702.4-201ENST00000618393 416 ntBASIC16.99■□□□□ 0.31
CDH9Q9ULB4 AL109936.8-201ENST00000641772 604 ntBASIC16.99■□□□□ 0.31
CDH9Q9ULB4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CDH9Q9ULB4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 SPTLC1P1-201ENST00000447199 261 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.98■□□□□ 0.31
CDH9Q9ULB4 AC124067.4-201ENST00000519691 2379 ntBASIC16.97■□□□□ 0.31
CDH9Q9ULB4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.97■□□□□ 0.31
CDH9Q9ULB4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms