Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CUEDC1Q9NWM3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 HLA-H-201ENST00000383620 1096 ntBASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 AC067863.1-201ENST00000494933 530 ntBASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 AC069262.1-201ENST00000539058 672 ntBASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 AC103702.1-201ENST00000548801 2630 ntBASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CUEDC1Q9NWM3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 SPDYE14P-201ENST00000442619 822 ntBASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 RARRES2P9-201ENST00000565168 469 ntBASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC061975.2-201ENST00000581722 295 ntBASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC015911.4-201ENST00000588022 1070 ntBASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC005498.2-205ENST00000593218 784 ntBASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CUEDC1Q9NWM3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms