Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 RARRES2P5-201ENST00000564013 466 ntBASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 WFDC1-204ENST00000613603 549 ntBASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PAAF1Q9BRP4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 REXO1L1P-202ENST00000608646 1974 ntBASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 AL158212.4-201ENST00000624062 1286 ntBASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PAAF1Q9BRP4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PAAF1Q9BRP4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 CLK3P2-201ENST00000427566 1453 ntBASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PAAF1Q9BRP4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PAAF1Q9BRP4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms