Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 COX5BP1-201ENST00000507622 393 ntBASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
VPS13AQ96RL7 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 EEF1DP4-201ENST00000446006 880 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 DRD5P1-201ENST00000456605 1438 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 RN7SL818P-201ENST00000485099 259 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 MIR4321-201ENST00000592276 80 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 ECM1P1-201ENST00000604092 1279 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 RN7SL725P-201ENST00000606439 259 ntBASIC15.66■□□□□ 0.1
VPS13AQ96RL7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VPS13AQ96RL7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 C1QBPP1-201ENST00000400117 770 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 AC024681.1-201ENST00000521917 487 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 AC145423.3-201ENST00000615987 467 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 ACTG1P2-201ENST00000415776 1125 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 ACTG1P11-201ENST00000425411 1125 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 MIR3147-201ENST00000577811 66 ntBASIC15.65■□□□□ 0.1
VPS13AQ96RL7 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.65■□□□□ 0.1
VPS13AQ96RL7 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
VPS13AQ96RL7 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms