Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 AC009336.1-201ENST00000608941 1553 ntBASIC15.28■□□□□ 0.04
NR1H4Q96RI1 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NR1H4Q96RI1 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NR1H4Q96RI1 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
NR1H4Q96RI1 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 MYO15B-237ENST00000642007 4893 ntBASIC15.27■□□□□ 0.03
NR1H4Q96RI1 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 AC140479.7-201ENST00000636301 2332 ntBASIC15.27■□□□□ 0.03
NR1H4Q96RI1 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
NR1H4Q96RI1 PTENP1-202ENST00000532280 3996 ntBASIC15.26■□□□□ 0.03
NR1H4Q96RI1 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AC092127.1-201ENST00000567093 3455 ntBASIC15.26■□□□□ 0.03
NR1H4Q96RI1 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 KRT18P22-201ENST00000402024 1347 ntBASIC15.26■□□□□ 0.03
NR1H4Q96RI1 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 NEK4P2-201ENST00000580004 1012 ntBASIC15.26■□□□□ 0.03
NR1H4Q96RI1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NR1H4Q96RI1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NR1H4Q96RI1 AP000523.1-201ENST00000398242 1049 ntBASIC15.25■□□□□ 0.03
NR1H4Q96RI1 AL596275.1-201ENST00000423464 877 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms