Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.55■□□□□ 0.08
VMP1Q96GC9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VMP1Q96GC9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AC254562.1-201ENST00000417586 456 ntBASIC15.54■□□□□ 0.08
VMP1Q96GC9 RPS8P6-201ENST00000426177 609 ntBASIC15.54■□□□□ 0.08
VMP1Q96GC9 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AC021097.1-201ENST00000607902 574 ntBASIC15.54■□□□□ 0.08
VMP1Q96GC9 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VMP1Q96GC9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 AC006058.4-201ENST00000624016 1670 ntBASIC15.54■□□□□ 0.08
VMP1Q96GC9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VMP1Q96GC9 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AL391256.1-201ENST00000443260 1855 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AL355306.1-201ENST00000415580 579 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 AC092474.2-201ENST00000424288 719 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 AL671277.1-201ENST00000429656 993 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SNHG9-202ENST00000564014 471 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 RARRES2P8-201ENST00000566335 367 ntBASIC15.53■□□□□ 0.08
VMP1Q96GC9 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VMP1Q96GC9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.53■□□□□ 0.08
VMP1Q96GC9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms