Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TTC28Q96AY4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TTC28Q96AY4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 ZACNP1-201ENST00000612259 710 ntBASIC16.01■□□□□ 0.15
TTC28Q96AY4 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TTC28Q96AY4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 AL023803.2-201ENST00000620080 638 ntBASIC16.01■□□□□ 0.15
TTC28Q96AY4 AC007718.1-201ENST00000621078 280 ntBASIC16.01■□□□□ 0.15
TTC28Q96AY4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.01■□□□□ 0.15
TTC28Q96AY4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16■□□□□ 0.15
TTC28Q96AY4 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16■□□□□ 0.15
TTC28Q96AY4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16■□□□□ 0.15
TTC28Q96AY4 KRT18P43-201ENST00000469825 1281 ntBASIC16■□□□□ 0.15
TTC28Q96AY4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16■□□□□ 0.15
TTC28Q96AY4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16■□□□□ 0.15
TTC28Q96AY4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
TTC28Q96AY4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 AC093525.9-201ENST00000624961 1746 ntBASIC16■□□□□ 0.15
TTC28Q96AY4 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16■□□□□ 0.15
TTC28Q96AY4 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC16■□□□□ 0.15
TTC28Q96AY4 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TTC28Q96AY4 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16■□□□□ 0.15
TTC28Q96AY4 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16■□□□□ 0.15
TTC28Q96AY4 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC16■□□□□ 0.15
TTC28Q96AY4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16■□□□□ 0.15
TTC28Q96AY4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 DUT-207ENST00000559416 635 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TTC28Q96AY4 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.99■□□□□ 0.15
TTC28Q96AY4 MIR6858-201ENST00000620733 67 ntBASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms