Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLHC1Q8NHS4 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC007967.2-201ENST00000432613 625 ntBASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AL078644.1-201ENST00000609881 752 ntBASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC104109.2-201ENST00000602919 1418 ntBASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC025580.3-201ENST00000617932 1424 ntBASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AC067930.6-201ENST00000623257 4947 ntBASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLHC1Q8NHS4 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 KRT18P34-201ENST00000488218 1270 ntBASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AL662844.1-201ENST00000546340 181 ntBASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC064836.3-201ENST00000607928 673 ntBASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC004877.2-201ENST00000623941 599 ntBASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 AC007064.4-201ENST00000637740 555 ntBASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLHC1Q8NHS4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms