Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 ACKR1-201ENST00000368121 1240 ntBASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 AC013467.2-201ENST00000605472 835 ntBASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMC1BQ8NDV3 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 AC016700.1-201ENST00000429424 312 ntBASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 PGAM1P5-201ENST00000548011 764 ntBASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 MIR3147-201ENST00000577811 66 ntBASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMC1BQ8NDV3 AL136982.4-201ENST00000437689 1740 ntBASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 SPTLC1P5-201ENST00000450718 252 ntBASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SMC1BQ8NDV3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SMC1BQ8NDV3 BICD1-207ENST00000551848 1962 ntBASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms