Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS52Q8N1B4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 RNF216P1-203ENST00000404404 2427 ntBASIC17.54■□□□□ 0.4
VPS52Q8N1B4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 AC007541.1-201ENST00000570282 1469 ntBASIC17.54■□□□□ 0.4
VPS52Q8N1B4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
VPS52Q8N1B4 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 SNX33P1-201ENST00000592116 1762 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AC078925.2-201ENST00000624013 1973 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 OR8S1-201ENST00000310194 1080 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 HLA-J-202ENST00000469281 1241 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 MEIS3P1-201ENST00000495167 958 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AL079307.3-201ENST00000556114 283 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AL132655.2-201ENST00000596276 594 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AL133215.2-201ENST00000609242 977 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AL008721.1-201ENST00000609964 604 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 AL391005.1-201ENST00000623953 2435 ntBASIC17.53■□□□□ 0.4
VPS52Q8N1B4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS52Q8N1B4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS52Q8N1B4 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS52Q8N1B4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms