Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
LINC00643Q86TS7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.8
LINC00643Q86TS7 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 AC004945.1-201ENST00000416738 983 ntBASIC10.02□□□□□ -0.81
LINC00643Q86TS7 POM121L13P-201ENST00000422362 380 ntBASIC10.02□□□□□ -0.81
LINC00643Q86TS7 FAM8A3P-201ENST00000427218 844 ntBASIC10.02□□□□□ -0.81
LINC00643Q86TS7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 DBI-210ENST00000542275 757 ntTSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 C1QL1P1-201ENST00000568105 661 ntBASIC10.02□□□□□ -0.81
LINC00643Q86TS7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
LINC00643Q86TS7 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 KRT8P44-201ENST00000441609 1350 ntBASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 AC019294.4-201ENST00000561777 2905 ntBASIC10.01□□□□□ -0.81
LINC00643Q86TS7 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms