Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 AC011477.6-201ENST00000604980 1927 ntBASIC19.31■□□□□ 0.68
RNF20Q5VTR2 PAUPAR-201ENST00000630360 2965 ntBASIC19.31■□□□□ 0.68
RNF20Q5VTR2 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
RNF20Q5VTR2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 FAM220BP-201ENST00000377689 816 ntBASIC19.3■□□□□ 0.68
RNF20Q5VTR2 AP000347.1-202ENST00000435868 847 ntBASIC19.3■□□□□ 0.68
RNF20Q5VTR2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RNF20Q5VTR2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 HLA-H-201ENST00000383620 1096 ntBASIC19.29■□□□□ 0.68
RNF20Q5VTR2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 RNA5SP410-201ENST00000516285 106 ntBASIC19.29■□□□□ 0.68
RNF20Q5VTR2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.29■□□□□ 0.68
RNF20Q5VTR2 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF20Q5VTR2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 AL592309.1-201ENST00000443127 649 ntBASIC19.28■□□□□ 0.68
RNF20Q5VTR2 CEND1P1-201ENST00000451006 455 ntBASIC19.28■□□□□ 0.68
RNF20Q5VTR2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF20Q5VTR2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms