Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 SLC7A15P-201ENST00000424028 1363 ntBASIC15.55■□□□□ 0.08
COL28A1Q2UY09 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 AC007389.4-201ENST00000454674 793 ntBASIC15.55■□□□□ 0.08
COL28A1Q2UY09 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 AL583810.1-201ENST00000553344 1045 ntBASIC15.55■□□□□ 0.08
COL28A1Q2UY09 RHOQP1-201ENST00000555758 579 ntBASIC15.55■□□□□ 0.08
COL28A1Q2UY09 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL28A1Q2UY09 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 MYCLP2-201ENST00000449268 967 ntBASIC15.54■□□□□ 0.08
COL28A1Q2UY09 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 AL031055.1-201ENST00000606362 631 ntBASIC15.54■□□□□ 0.08
COL28A1Q2UY09 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.54■□□□□ 0.08
COL28A1Q2UY09 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
COL28A1Q2UY09 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms