Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 SCARNA2-201ENST00000458748 420 ntBASIC18.93■□□□□ 0.62
MRE11P49959 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 AL356488.2-201ENST00000602755 427 ntBASIC18.93■□□□□ 0.62
MRE11P49959 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.93■□□□□ 0.62
MRE11P49959 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
MRE11P49959 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
MRE11P49959 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MRE11P49959 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.92■□□□□ 0.62
MRE11P49959 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.92■□□□□ 0.62
MRE11P49959 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
MRE11P49959 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.92■□□□□ 0.62
MRE11P49959 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.92■□□□□ 0.62
MRE11P49959 PAWRP1-201ENST00000451083 565 ntBASIC18.92■□□□□ 0.62
MRE11P49959 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.92■□□□□ 0.62
MRE11P49959 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MRE11P49959 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 MED15P5-201ENST00000423150 992 ntBASIC18.91■□□□□ 0.62
MRE11P49959 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.91■□□□□ 0.62
MRE11P49959 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 AL049840.3-201ENST00000602669 611 ntBASIC18.91■□□□□ 0.62
MRE11P49959 FAM197Y3-203ENST00000618346 717 ntBASIC18.91■□□□□ 0.62
MRE11P49959 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
MRE11P49959 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
MRE11P49959 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.91■□□□□ 0.62
MRE11P49959 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 AC232323.1-201ENST00000540724 2099 ntBASIC18.91■□□□□ 0.62
MRE11P49959 REXO1L5P-201ENST00000622260 2098 ntBASIC18.91■□□□□ 0.62
MRE11P49959 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms