Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SHMT2P34897 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.86■□□□□ 0.13
SHMT2P34897 TSPY26P-202ENST00000565928 3884 ntBASIC15.86■□□□□ 0.13
SHMT2P34897 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.86■□□□□ 0.13
SHMT2P34897 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.86■□□□□ 0.13
SHMT2P34897 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 AL589702.1-201ENST00000641229 1509 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.85■□□□□ 0.13
SHMT2P34897 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.85■□□□□ 0.13
SHMT2P34897 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
SHMT2P34897 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 SPDYE14P-201ENST00000442619 822 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 AC109322.1-201ENST00000524499 1264 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 RARRES2P9-201ENST00000565168 469 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 AC024267.1-201ENST00000582320 895 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.85■□□□□ 0.13
SHMT2P34897 AC093028.1-201ENST00000622998 982 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.85■□□□□ 0.13
SHMT2P34897 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 ME2P1-201ENST00000426028 1970 ntBASIC15.85■□□□□ 0.13
SHMT2P34897 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
SHMT2P34897 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.85■□□□□ 0.13
SHMT2P34897 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SHMT2P34897 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.85■□□□□ 0.13
SHMT2P34897 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.84■□□□□ 0.13
SHMT2P34897 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 CNN2P2-201ENST00000443536 909 ntBASIC15.84■□□□□ 0.13
SHMT2P34897 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.84■□□□□ 0.13
SHMT2P34897 CNN2P3-201ENST00000450201 906 ntBASIC15.84■□□□□ 0.13
SHMT2P34897 RNA5SP410-201ENST00000516285 106 ntBASIC15.84■□□□□ 0.13
SHMT2P34897 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.84■□□□□ 0.13
SHMT2P34897 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.84■□□□□ 0.13
SHMT2P34897 AL136317.3-201ENST00000618497 906 ntBASIC15.84■□□□□ 0.13
SHMT2P34897 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
SHMT2P34897 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SHMT2P34897 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SHMT2P34897 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.84■□□□□ 0.13
SHMT2P34897 AP3S2-216ENST00000617003 1561 ntBASIC15.83■□□□□ 0.13
SHMT2P34897 AL136379.1-201ENST00000623471 2642 ntBASIC15.83■□□□□ 0.13
SHMT2P34897 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
SHMT2P34897 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SHMT2P34897 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 435.5 ms