Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC21.15■□□□□ 0.98
HOXC9P31274 AC005229.1-201ENST00000392885 409 ntBASIC21.15■□□□□ 0.98
HOXC9P31274 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC21.15■□□□□ 0.98
HOXC9P31274 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 AL583810.1-201ENST00000553344 1045 ntBASIC21.15■□□□□ 0.98
HOXC9P31274 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC21.15■□□□□ 0.98
HOXC9P31274 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC21.15■□□□□ 0.98
HOXC9P31274 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.15■□□□□ 0.98
HOXC9P31274 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
HOXC9P31274 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC9P31274 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 RNF165-205ENST00000588679 2904 ntBASIC21.15■□□□□ 0.98
HOXC9P31274 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HOXC9P31274 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.14■□□□□ 0.98
HOXC9P31274 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC21.14■□□□□ 0.98
HOXC9P31274 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC9P31274 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC9P31274 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC21.14■□□□□ 0.98
HOXC9P31274 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC9P31274 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC9P31274 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
HOXC9P31274 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HOXC9P31274 RPF1-202ENST00000370656 724 ntTSL 2 BASIC21.14■□□□□ 0.97
HOXC9P31274 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 C1QBPP1-201ENST00000400117 770 ntBASIC21.14■□□□□ 0.97
HOXC9P31274 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC21.14■□□□□ 0.97
HOXC9P31274 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC21.14■□□□□ 0.97
HOXC9P31274 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC21.14■□□□□ 0.97
HOXC9P31274 RPL13AP25-201ENST00000484130 612 ntBASIC21.14■□□□□ 0.97
HOXC9P31274 PACS1-203ENST00000524815 628 ntTSL 4 BASIC21.14■□□□□ 0.97
HOXC9P31274 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC21.14■□□□□ 0.97
HOXC9P31274 PTP4A1P2-201ENST00000546033 454 ntBASIC21.14■□□□□ 0.97
HOXC9P31274 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 APRT-204ENST00000563655 709 ntTSL 5 BASIC21.14■□□□□ 0.97
HOXC9P31274 AC005252.2-201ENST00000624630 1141 ntBASIC21.14■□□□□ 0.97
HOXC9P31274 PFAS-212ENST00000625942 396 ntTSL 5 BASIC21.14■□□□□ 0.97
HOXC9P31274 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
HOXC9P31274 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.14■□□□□ 0.97
HOXC9P31274 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC21.14■□□□□ 0.97
HOXC9P31274 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC9P31274 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HOXC9P31274 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 USE1-206ENST00000595101 1776 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 AC018892.3-201ENST00000623986 2499 ntBASIC21.13■□□□□ 0.97
HOXC9P31274 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 AC092933.1-201ENST00000393644 945 ntBASIC21.13■□□□□ 0.97
HOXC9P31274 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC21.13■□□□□ 0.97
HOXC9P31274 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HOXC9P31274 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 AL121723.1-201ENST00000445194 1519 ntBASIC21.13■□□□□ 0.97
HOXC9P31274 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC9P31274 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC9P31274 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC21.12■□□□□ 0.97
HOXC9P31274 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC9P31274 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC9P31274 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC9P31274 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
HOXC9P31274 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms