Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDH3P22223 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.92■□□□□ 0.14
CDH3P22223 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.92■□□□□ 0.14
CDH3P22223 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.92■□□□□ 0.14
CDH3P22223 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.91■□□□□ 0.14
CDH3P22223 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH3P22223 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH3P22223 AC105233.2-201ENST00000523697 349 ntBASIC15.91■□□□□ 0.14
CDH3P22223 AF228730.5-201ENST00000530288 346 ntBASIC15.91■□□□□ 0.14
CDH3P22223 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
CDH3P22223 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH3P22223 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.91■□□□□ 0.14
CDH3P22223 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.91■□□□□ 0.14
CDH3P22223 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDH3P22223 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.91■□□□□ 0.14
CDH3P22223 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CDH3P22223 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH3P22223 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 FAM86GP-201ENST00000448322 971 ntBASIC15.9■□□□□ 0.14
CDH3P22223 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH3P22223 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.9■□□□□ 0.14
CDH3P22223 PRYP6-201ENST00000514804 343 ntBASIC15.9■□□□□ 0.14
CDH3P22223 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.9■□□□□ 0.14
CDH3P22223 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.9■□□□□ 0.14
CDH3P22223 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.9■□□□□ 0.14
CDH3P22223 AL512652.2-201ENST00000625156 1716 ntBASIC15.9■□□□□ 0.14
CDH3P22223 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
CDH3P22223 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDH3P22223 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms