Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A3P12111 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
COL6A3P12111 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A3P12111 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A3P12111 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL6A3P12111 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A3P12111 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A3P12111 AL357563.1-201ENST00000404728 395 ntBASIC16.4■□□□□ 0.22
COL6A3P12111 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A3P12111 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A3P12111 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A3P12111 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A3P12111 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A3P12111 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 AC009053.2-201ENST00000563701 2365 ntBASIC16.39■□□□□ 0.21
COL6A3P12111 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
COL6A3P12111 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A3P12111 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 CR392039.1-201ENST00000623217 204 ntBASIC16.39■□□□□ 0.21
COL6A3P12111 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A3P12111 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
COL6A3P12111 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 NDUFS6P1-201ENST00000485187 316 ntBASIC16.39■□□□□ 0.21
COL6A3P12111 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.39■□□□□ 0.21
COL6A3P12111 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A3P12111 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL6A3P12111 COX20P1-201ENST00000366529 357 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 PSMD4P1-201ENST00000433951 1109 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 EEF1DP4-201ENST00000446006 880 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
COL6A3P12111 AC107373.2-201ENST00000607735 490 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A3P12111 LINC01451-201ENST00000623792 534 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 AC092053.1-201ENST00000605787 1936 ntBASIC16.38■□□□□ 0.21
COL6A3P12111 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.38■□□□□ 0.21
COL6A3P12111 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
COL6A3P12111 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL6A3P12111 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 PMEL-214ENST00000550447 901 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A3P12111 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16.38■□□□□ 0.21
COL6A3P12111 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A3P12111 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A3P12111 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A3P12111 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms