Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.71■□□□□ 0.11
LDLRP01130 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.71■□□□□ 0.11
LDLRP01130 PRSS29P-201ENST00000440800 595 ntBASIC15.71■□□□□ 0.11
LDLRP01130 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 PAWRP1-201ENST00000451083 565 ntBASIC15.71■□□□□ 0.11
LDLRP01130 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
LDLRP01130 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.71■□□□□ 0.11
LDLRP01130 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.71■□□□□ 0.11
LDLRP01130 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
LDLRP01130 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
LDLRP01130 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.71■□□□□ 0.1
LDLRP01130 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
LDLRP01130 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LDLRP01130 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.71■□□□□ 0.1
LDLRP01130 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
LDLRP01130 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 SIGLEC16-201ENST00000599858 1437 ntBASIC15.7■□□□□ 0.1
LDLRP01130 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.7■□□□□ 0.1
LDLRP01130 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 AC108073.2-201ENST00000464002 357 ntBASIC15.7■□□□□ 0.1
LDLRP01130 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.7■□□□□ 0.1
LDLRP01130 AL031432.2-201ENST00000566714 459 ntBASIC15.7■□□□□ 0.1
LDLRP01130 AL928711.1-201ENST00000570165 459 ntBASIC15.7■□□□□ 0.1
LDLRP01130 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 AL589182.2-201ENST00000619332 1049 ntBASIC15.7■□□□□ 0.1
LDLRP01130 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 AC132938.5-201ENST00000624980 1813 ntBASIC15.7■□□□□ 0.1
LDLRP01130 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.7■□□□□ 0.1
LDLRP01130 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
LDLRP01130 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDLRP01130 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
LDLRP01130 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 AC006277.1-201ENST00000624348 1610 ntBASIC15.69■□□□□ 0.1
LDLRP01130 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.69■□□□□ 0.1
LDLRP01130 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDLRP01130 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
LDLRP01130 AL139400.1-201ENST00000366220 510 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms