Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SGCEO43556 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.38□□□□□ -0.11
SGCEO43556 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SGCEO43556 AP002472.1-201ENST00000577490 586 ntBASIC14.38□□□□□ -0.11
SGCEO43556 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.38□□□□□ -0.11
SGCEO43556 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SGCEO43556 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 WASH6P-202ENST00000359512 1437 ntBASIC14.38□□□□□ -0.11
SGCEO43556 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SGCEO43556 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.38□□□□□ -0.11
SGCEO43556 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SGCEO43556 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 DBET-201ENST00000630918 3363 ntBASIC14.37□□□□□ -0.11
SGCEO43556 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 AC023274.1-201ENST00000418278 595 ntBASIC14.37□□□□□ -0.11
SGCEO43556 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.37□□□□□ -0.11
SGCEO43556 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.37□□□□□ -0.11
SGCEO43556 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.37□□□□□ -0.11
SGCEO43556 AC040169.1-201ENST00000565382 521 ntBASIC14.37□□□□□ -0.11
SGCEO43556 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
SGCEO43556 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SGCEO43556 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.37□□□□□ -0.11
SGCEO43556 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SGCEO43556 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
SGCEO43556 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.36□□□□□ -0.11
SGCEO43556 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.36□□□□□ -0.11
SGCEO43556 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SGCEO43556 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms