Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
NPHP1O15259 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.32■□□□□ 0.84
NPHP1O15259 AC098850.1-201ENST00000419919 790 ntBASIC20.32■□□□□ 0.84
NPHP1O15259 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP1O15259 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP1O15259 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP1O15259 AC092658.1-201ENST00000505836 891 ntBASIC20.32■□□□□ 0.84
NPHP1O15259 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP1O15259 FUZ-207ENST00000526575 482 ntTSL 4 BASIC20.32■□□□□ 0.84
NPHP1O15259 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.32■□□□□ 0.84
NPHP1O15259 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP1O15259 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP1O15259 WFDC1-204ENST00000613603 549 ntBASIC20.32■□□□□ 0.84
NPHP1O15259 AL033527.5-201ENST00000641382 801 ntBASIC20.32■□□□□ 0.84
NPHP1O15259 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP1O15259 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP1O15259 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
NPHP1O15259 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP1O15259 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP1O15259 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 AL645728.1-201ENST00000366221 2101 ntBASIC20.31■□□□□ 0.84
NPHP1O15259 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 KRT223P-202ENST00000449164 1292 ntBASIC20.31■□□□□ 0.84
NPHP1O15259 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.31■□□□□ 0.84
NPHP1O15259 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.31■□□□□ 0.84
NPHP1O15259 AP005482.1-201ENST00000563722 1273 ntBASIC20.31■□□□□ 0.84
NPHP1O15259 AC074044.1-201ENST00000609673 707 ntBASIC20.31■□□□□ 0.84
NPHP1O15259 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NPHP1O15259 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
NPHP1O15259 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP1O15259 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP1O15259 AC080080.1-201ENST00000625121 2420 ntBASIC20.31■□□□□ 0.84
NPHP1O15259 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NPHP1O15259 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NPHP1O15259 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP1O15259 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP1O15259 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
NPHP1O15259 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.3■□□□□ 0.84
NPHP1O15259 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.3■□□□□ 0.84
NPHP1O15259 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
NPHP1O15259 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP1O15259 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP1O15259 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms