Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
UPK1AO00322 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
UPK1AO00322 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.33■□□□□ 0.05
UPK1AO00322 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.33■□□□□ 0.05
UPK1AO00322 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.33■□□□□ 0.05
UPK1AO00322 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.33■□□□□ 0.04
UPK1AO00322 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 AL671883.3-201ENST00000603274 991 ntBASIC15.33■□□□□ 0.04
UPK1AO00322 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 AC073439.1-201ENST00000624121 1774 ntBASIC15.33■□□□□ 0.04
UPK1AO00322 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.33■□□□□ 0.04
UPK1AO00322 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.33■□□□□ 0.04
UPK1AO00322 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
UPK1AO00322 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
UPK1AO00322 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 AL109954.1-202ENST00000564051 2148 ntBASIC15.32■□□□□ 0.04
UPK1AO00322 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
UPK1AO00322 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
UPK1AO00322 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.32■□□□□ 0.04
UPK1AO00322 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.32■□□□□ 0.04
UPK1AO00322 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.32■□□□□ 0.04
UPK1AO00322 AC091812.2-201ENST00000619081 385 ntBASIC15.32■□□□□ 0.04
UPK1AO00322 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
UPK1AO00322 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
UPK1AO00322 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.32■□□□□ 0.04
UPK1AO00322 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.32■□□□□ 0.04
UPK1AO00322 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.32■□□□□ 0.04
UPK1AO00322 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.32■□□□□ 0.04
UPK1AO00322 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
UPK1AO00322 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 MCCD1P2-201ENST00000423228 335 ntBASIC15.31■□□□□ 0.04
UPK1AO00322 AP000347.1-202ENST00000435868 847 ntBASIC15.31■□□□□ 0.04
UPK1AO00322 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.31■□□□□ 0.04
UPK1AO00322 AC002347.1-201ENST00000569543 541 ntBASIC15.31■□□□□ 0.04
UPK1AO00322 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.31■□□□□ 0.04
UPK1AO00322 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.31■□□□□ 0.04
UPK1AO00322 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms