Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 BCL2-203ENST00000589955 5011 ntBASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 AC136604.1-201ENST00000418535 575 ntBASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 AC114501.2-201ENST00000439631 535 ntBASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 TSPY16P-201ENST00000449843 468 ntBASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM35Q9UPQ4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AL512638.1-201ENST00000457493 794 ntBASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AKR1B10P2-201ENST00000577332 927 ntBASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AL450472.2-201ENST00000603663 1156 ntBASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM35Q9UPQ4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 FAM8A3P-201ENST00000427218 844 ntBASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 SERBP1P5-201ENST00000510079 1181 ntBASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 AC004461.2-201ENST00000629517 803 ntBASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM35Q9UPQ4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM35Q9UPQ4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms