Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 AC061975.2-201ENST00000581722 295 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 AC015936.2-201ENST00000593177 259 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TUBB8P12-201ENST00000308911 1335 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TUBB7P-202ENST00000428444 1305 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 TUBB8P7-204ENST00000567960 1332 ntBASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMD1Q9UGP4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIMD1Q9UGP4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.83■□□□□ 0.29
LIMD1Q9UGP4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIMD1Q9UGP4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
LIMD1Q9UGP4 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 CLK3P2-201ENST00000427566 1453 ntBASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 AC013467.2-201ENST00000605472 835 ntBASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 MIR6787-201ENST00000616675 61 ntBASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 AL589702.1-201ENST00000641229 1509 ntBASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMD1Q9UGP4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 AC093724.1-201ENST00000448659 1027 ntBASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 AC104596.2-201ENST00000512793 793 ntBASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 TIMM17BP1-201ENST00000545713 516 ntBASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 AC010319.3-201ENST00000597028 470 ntBASIC16.82■□□□□ 0.28
LIMD1Q9UGP4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms