Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 AC027369.6-201ENST00000525520 931 ntBASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 PAUPAR-201ENST00000630360 2965 ntBASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLIP2Q9UDT6 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 MAX-210ENST00000555419 765 ntTSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 MIR4745-201ENST00000577608 62 ntBASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLIP2Q9UDT6 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AC103702.1-201ENST00000548801 2630 ntBASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AL353705.2-201ENST00000428243 662 ntBASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 AJ011932.1-201ENST00000621707 465 ntBASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.17■□□□□ 0.66
CLIP2Q9UDT6 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms