Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 AC007191.1-201ENST00000623179 2995 ntBASIC15.74■□□□□ 0.11
NDE1Q9NXR1 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NDE1Q9NXR1 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 AC079776.2-201ENST00000641154 1609 ntBASIC15.73■□□□□ 0.11
NDE1Q9NXR1 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 TERF1P1-201ENST00000311003 1181 ntBASIC15.73■□□□□ 0.11
NDE1Q9NXR1 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 AC005363.2-201ENST00000618631 242 ntBASIC15.73■□□□□ 0.11
NDE1Q9NXR1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 NCF1C-201ENST00000438382 1427 ntBASIC15.73■□□□□ 0.11
NDE1Q9NXR1 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.73■□□□□ 0.11
NDE1Q9NXR1 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 AC026396.1-201ENST00000419388 421 ntBASIC15.72■□□□□ 0.11
NDE1Q9NXR1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 MINOS1P3-201ENST00000457048 203 ntBASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
NDE1Q9NXR1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 U82695.1-201ENST00000635752 1889 ntBASIC15.71■□□□□ 0.11
NDE1Q9NXR1 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.71■□□□□ 0.11
NDE1Q9NXR1 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms