Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 RNF216P1-203ENST00000404404 2427 ntBASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.18■□□□□ 0.18
TM9SF3Q9HD45 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AC138969.3-201ENST00000546612 1459 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AC138932.2-201ENST00000548268 1459 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AC126755.4-201ENST00000549796 1459 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 DFFBP1-201ENST00000433250 979 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AL512361.1-201ENST00000554200 418 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AC010336.2-201ENST00000564226 506 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 AC024267.1-201ENST00000582320 895 ntBASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.17■□□□□ 0.18
TM9SF3Q9HD45 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC026691.1-201ENST00000602502 2017 ntBASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC007274.1-201ENST00000439805 662 ntBASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AP002490.2-201ENST00000524791 560 ntBASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC020765.3-201ENST00000613051 740 ntBASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 AL512652.2-201ENST00000625156 1716 ntBASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.16■□□□□ 0.18
TM9SF3Q9HD45 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TM9SF3Q9HD45 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TM9SF3Q9HD45 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TM9SF3Q9HD45 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms