Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 RPSAP36-202ENST00000494591 1261 ntBASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 MIR4741-201ENST00000579822 90 ntBASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK3Q9BYB0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 ACR-203ENST00000529621 708 ntTSL 5 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 AP006547.1-201ENST00000563435 692 ntBASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 AC145423.3-201ENST00000615987 467 ntBASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 AC018892.3-201ENST00000623986 2499 ntBASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.45■□□□□ 0.86
SHANK3Q9BYB0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 BTBD6P1-201ENST00000412176 1267 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 LDHBP1-201ENST00000455730 1119 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 OARD1-212ENST00000482515 832 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AC022188.1-201ENST00000620960 1664 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AC253536.4-201ENST00000440539 267 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 CHMP4BP1-201ENST00000556017 588 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 AC026740.1-201ENST00000607068 791 ntBASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC20.44■□□□□ 0.86
SHANK3Q9BYB0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 AC092171.3-201ENST00000610122 2651 ntBASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 REEP1-202ENST00000453231 940 ntTSL 2 BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 HIST2H2BC-201ENST00000498492 580 ntBASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 EEF1DP1-201ENST00000585891 896 ntBASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 AC016629.1-201ENST00000596579 586 ntBASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SHANK3Q9BYB0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHANK3Q9BYB0 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms