Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 PCDHA14-201ENST00000506751 2298 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 MEP1AP4-201ENST00000423244 1087 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 HIST3H2BA-201ENST00000436555 524 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 RN7SL204P-201ENST00000582831 262 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 LINC02560-201ENST00000596379 459 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 AC074044.1-201ENST00000609673 707 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 BNIP3P1-202ENST00000550043 1585 ntBASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP4AQ9BY43 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 AC002472.2-201ENST00000442739 958 ntBASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 STK24-203ENST00000397517 4578 ntTSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CHMP4AQ9BY43 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 PHKG1P2-201ENST00000457537 863 ntBASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 Z97205.2-201ENST00000564697 1639 ntBASIC20.52■□□□□ 0.88
CHMP4AQ9BY43 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms